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Seminar by Vidya Ganapati (Assistant Professor of Engineering, Swarthmore College)

When Jun 14, 2019
from 10:30 AM to 11:30 AM
Where Lecture Theatre 2, Department of Chemical Engineering and Biotechnology, Philippa Fawcett Drive, Cambridge CB3 0AS
Contact Name
Contact Phone +44 (0)1223 761208
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'Deep Learned Optical Multiplexing for Microscopy'

Vidya Ganapati (Assistant Professor of Engineering at Swarthmore College)

Fourier ptychographic microscopy is a technique that achieves a high space-bandwidth product, i.e. high resolution and high field-of-view. In Fourier ptychographic microscopy, variable illumination patterns are used to collect multiple low-resolution images. These low-resolution images are then computationally combined to create an image with resolution exceeding that of any single image from the microscope. Due to the necessity of acquiring multiple low-resolution images, Fourier ptychographic microscopy has poor temporal resolution. Our aim is to improve temporal resolution in Fourier ptychographic microscopy, achieving single-shot imaging without sacrificing space-bandwidth product. We use example-based super-resolution to achieve this goal by trading off generality of the imaging approach.

In example-based super-resolution, the function relating low-resolution images to their high-resolution counterparts is learned from a given dataset. We take the additional step of modifying the imaging hardware in order to collect more informative low-resolution images to enable better high-resolution image reconstruction. We show that this "physical preprocessing" allows for improved image reconstruction with deep learning in Fourier ptychographic microscopy.

In this work, we use deep learning to jointly optimize a single illumination pattern and the parameters of a post-processing reconstruction algorithm for a given sample type. We show that our joint optimization yields improved image reconstruction as compared with sole optimization of the post-processing reconstruction algorithm, establishing the importance of physical preprocessing in example-based super-resolution.

Upcoming events

Seminar by Siddharth Ghosh (German Research Foundation/DFG Fellow, Centre for Misfolding Diseases, Maxwell Centre, Cambridge)

Dec 02, 2019

Lecture Theatre 1, Department of Chemical Engineering and Biotechnology

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